milkviz.anno_clustermap#
- milkviz.anno_clustermap(data: pd.DataFrame, row_colors: str | List[str] = None, row_colors_cmap: str | List[str] = None, row_colors_order: Dict = None, row_colors_label: Dict = None, row_label: str = None, row_legend_title: str = None, row_legend_split: bool = True, col_colors: str | List[str] = None, col_colors_cmap: str | List[str] = None, col_colors_order: Dict = None, col_colors_label: Dict = None, col_label: str = None, col_legend_title: str = None, col_legend_split: bool = True, heat_cmap: Any = None, legend_padding: float = 5, legend_kw: Dict = None, cbar_kw: Dict = None, categorical_cbar: Optional[List[str]] = None, cbar_title: str = None, row_cluster=True, col_cluster=True, **kwargs) sns.matrix.ClusterGrid#
Color or label annotated clustermap
- Parameters
- datapd.DataFrame
A dataframe, multi-levels annotations should store in MultiIndex
- row_labelstr, array-like of str
The index level used for y-axis label
- col_labelstr, array-like of str
The columns level used for x-axis label
- row_colorsstr, array-like of str
The index levels used to label in color stripe
- col_colorsstr, array-like of str
The columns levels used to label in color stripe
- row_colors_cmapdefault: “tab20”
The colormap for row_colors
- col_colors_cmapdefault: “echarts”
The colormap for col_colors
- row_colors_orderdict
Reorder the items in each level
- col_colors_orderdict
- row_colors_labeldict
Overwrite the name of each level,
- col_colors_labeldict
- row_legend_splitbool, default: True
Whether to split each level of colors stripe
- col_legend_splitbool, default: True
- row_legend_titlestr
The title of row legend, when row_legend_split = False
- col_legend_titlestr
The title of col legend, when col_legend_split = False
- legend_paddingfloat
The space between legend
- legend_kwdict
Options to customize legend, will be applied to all,
- cbar_kwdict
Options to customize colorbar, if categorical cbar, use legend_kw
- heat_cmapdefault: “RdBu_r”
The colormap for heatmap
- categorical_cbararray-like
Turn the colorbar in to categorical legend in text
- cbar_titlestr
Set the title for colorbar
- row_clusterbool
- col_clusterbool
- kwargs
Pass to
seaborn.clustermap()